Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12584779	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1483698	0.90[EUR][1000 genomes]
rs7333785	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7337453	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73550768	0.92[ASN][1000 genomes]
rs9563895	0.92[ASN][1000 genomes]
rs9563898	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9563899	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570488	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9570489	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9570490	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9570491	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9570492	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9570494	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9570497	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9570499	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570500	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570501	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570502	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570505	0.88[ASN][1000 genomes]
rs9570511	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9570516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61780400-61783600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:61780400-61783800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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