Variant report
| Variant | rs9570516 |
|---|---|
| Chromosome Location | chr13:61787071-61787072 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12584779 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1483698 | 0.90[EUR][1000 genomes] |
| rs7323627 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7333785 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7337453 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73550768 | 0.97[ASN][1000 genomes] |
| rs9563895 | 0.97[ASN][1000 genomes] |
| rs9563898 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9563899 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9570488 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9570489 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9570490 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9570491 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9570492 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9570494 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9570497 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9570499 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9570500 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9570501 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9570502 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9570505 | 0.83[ASN][1000 genomes] |
| rs9570511 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv900243 | chr13:61711163-61799269 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900244 | chr13:61769349-61856666 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61786400-61788400 | Weak transcription | Fetal Lung | lung |
