Variant report

Variant	rs1483698
Chromosome Location	chr13:61829958-61829959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12584779	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68088494	0.96[AFR][1000 genomes]
rs7323627	0.90[EUR][1000 genomes]
rs7328202	0.96[AFR][1000 genomes]
rs7337133	0.96[AFR][1000 genomes]
rs7338363	0.96[AFR][1000 genomes]
rs9563898	0.86[EUR][1000 genomes]
rs9563899	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9570494	0.81[EUR][1000 genomes]
rs9570497	0.84[EUR][1000 genomes]
rs9570499	0.84[EUR][1000 genomes]
rs9570500	0.86[EUR][1000 genomes]
rs9570501	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs9570502	1.00[CEU][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs9570511	0.84[EUR][1000 genomes]
rs9570516	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61829000-61830000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:61829000-61830000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:61829000-61830000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links