Variant report
| Variant | rs9570511 |
|---|---|
| Chromosome Location | chr13:61781605-61781606 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12584779 | 0.88[EUR][1000 genomes] |
| rs1483698 | 0.84[EUR][1000 genomes] |
| rs7323627 | 0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7333785 | 0.86[AMR][1000 genomes] |
| rs7337453 | 0.86[AMR][1000 genomes] |
| rs73550768 | 0.84[ASN][1000 genomes] |
| rs9563895 | 0.84[ASN][1000 genomes] |
| rs9563898 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9563899 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9570488 | 0.86[AMR][1000 genomes] |
| rs9570489 | 0.86[AMR][1000 genomes] |
| rs9570490 | 0.86[AMR][1000 genomes] |
| rs9570491 | 0.86[AMR][1000 genomes] |
| rs9570492 | 0.86[AMR][1000 genomes] |
| rs9570494 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9570497 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9570499 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9570500 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9570501 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9570502 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9570504 | 0.87[ASN][1000 genomes] |
| rs9570505 | 0.95[ASN][1000 genomes] |
| rs9570516 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv900243 | chr13:61711163-61799269 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900244 | chr13:61769349-61856666 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61780400-61783600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr13:61780400-61783800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
