Variant report

Variant	rs12587723
Chromosome Location	chr14:84439360-84439361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11159616	0.94[JPT][hapmap]
rs12433667	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12436525	0.94[ASN][1000 genomes]
rs12437234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586479	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586849	0.92[EUR][1000 genomes]
rs12587115	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588733	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12588936	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12589845	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12590706	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12898147	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17119417	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17119488	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17119542	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1986658	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4904149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4904150	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4904154	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58445096	0.88[ASN][1000 genomes]
rs72701041	0.93[ASN][1000 genomes]
rs74069027	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv974476	chr14:84433622-84441212	Active TSS Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv3530355	chr14:84434092-84441019	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3530357	chr14:84434133-84441002	Weak transcription Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	esv3530356	chr14:84434156-84440953	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv11303	chr14:84434221-84440941	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3530359	chr14:84434230-84440895	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv2763074	chr14:84435911-84439668	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84436200-84440800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:84436600-84440000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:84436600-84442000	Weak transcription	Ovary	ovary
4	chr14:84438000-84439600	Active TSS	Pancreas	Pancrea
5	chr14:84438800-84440800	Active TSS	Pancreatic Islets	Pancreatic Islet

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