Variant report

Variant	rs4904149
Chromosome Location	chr14:84442842-84442843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11159616	0.94[JPT][hapmap]
rs12433667	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12436525	0.90[ASN][1000 genomes]
rs12437234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12586479	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12586849	0.92[EUR][1000 genomes]
rs12587115	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12587723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12588733	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12588936	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12589845	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12590706	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12898147	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17119417	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17119488	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17119542	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1986658	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4904150	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4904154	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58445096	0.84[ASN][1000 genomes]
rs72701041	0.89[ASN][1000 genomes]
rs74069027	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84439600-84443000	Enhancers	Adipose Nuclei	Adipose
2	chr14:84440000-84443000	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:84440000-84443000	Enhancers	Hela-S3	cervix
4	chr14:84440600-84443000	Enhancers	Colon Smooth Muscle	Colon
5	chr14:84440600-84444200	Enhancers	Fetal Heart	heart
6	chr14:84440800-84443000	Enhancers	Fetal Stomach	stomach
7	chr14:84441200-84443000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:84441400-84443200	Enhancers	Fetal Lung	lung
9	chr14:84441800-84443000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:84442000-84443000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:84442000-84443000	Enhancers	Fetal Muscle Leg	muscle
12	chr14:84442000-84443000	Enhancers	Ovary	ovary
13	chr14:84442000-84443400	Enhancers	HUVEC	blood vessel
14	chr14:84442200-84443000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:84442200-84443000	Enhancers	Right Atrium	heart
16	chr14:84442200-84443000	Enhancers	Right Ventricle	heart
17	chr14:84442200-84448000	Weak transcription	Stomach Mucosa	stomach
18	chr14:84442400-84443000	Enhancers	Pancreas	Pancrea
19	chr14:84442800-84443000	Enhancers	Spleen	Spleen

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