Variant report

Variant	rs12619707
Chromosome Location	chr2:212255851-212255852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212253910..212256658-chr2:212257383..212259905,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10427172	0.87[ASN][1000 genomes]
rs11888548	0.87[ASN][1000 genomes]
rs11901831	0.87[ASN][1000 genomes]
rs16845944	0.87[ASN][1000 genomes]
rs16846036	1.00[JPT][hapmap]
rs1821661	0.87[ASN][1000 genomes]
rs34588906	0.93[ASN][1000 genomes]
rs56172792	0.87[ASN][1000 genomes]
rs58735954	0.87[ASN][1000 genomes]
rs59224996	0.93[ASN][1000 genomes]
rs60254210	0.87[ASN][1000 genomes]
rs66471203	0.87[ASN][1000 genomes]
rs66600814	0.87[ASN][1000 genomes]
rs67103742	0.89[ASN][1000 genomes]
rs72947641	0.87[ASN][1000 genomes]
rs72947669	0.95[ASN][1000 genomes]
rs72947685	1.00[ASN][1000 genomes]
rs73083810	0.87[ASN][1000 genomes]
rs73083812	0.87[ASN][1000 genomes]
rs7571041	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv460065	chr2:212244520-212276710	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv584315	chr2:212244520-212276710	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212245800-212256800	Weak transcription	Psoas Muscle	Psoas
2	chr2:212254800-212256400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr2:212255000-212256000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:212255000-212256000	Active TSS	Brain Hippocampus Middle	brain
5	chr2:212255000-212256400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:212255000-212256400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:212255200-212256000	Enhancers	Brain Substantia Nigra	brain
8	chr2:212255200-212256200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:212255200-212256200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:212255200-212256400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:212255200-212256400	Enhancers	Fetal Brain Female	brain
12	chr2:212255400-212256000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:212255400-212256200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:212255400-212256200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:212255400-212256400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr2:212255400-212256400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:212255400-212256400	Enhancers	Brain Anterior Caudate	brain
18	chr2:212255400-212256600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr2:212255400-212257600	Enhancers	Fetal Brain Male	brain
20	chr2:212255400-212258600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:212255600-212256000	Active TSS	Brain Cingulate Gyrus	brain
22	chr2:212255600-212256400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:212255600-212256800	Weak transcription	Brain Germinal Matrix	brain
24	chr2:212255800-212256200	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links