Variant report

Variant	rs59224996
Chromosome Location	chr2:212238592-212238593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10427172	0.93[ASN][1000 genomes]
rs11888548	0.93[ASN][1000 genomes]
rs11901831	0.93[ASN][1000 genomes]
rs12619707	0.93[ASN][1000 genomes]
rs16845944	0.93[ASN][1000 genomes]
rs1821661	0.93[ASN][1000 genomes]
rs34588906	0.95[ASN][1000 genomes]
rs56172792	0.93[ASN][1000 genomes]
rs57874167	0.92[AFR][1000 genomes]
rs58735954	0.93[ASN][1000 genomes]
rs60254210	0.93[ASN][1000 genomes]
rs60912786	0.86[AFR][1000 genomes]
rs66471203	0.93[ASN][1000 genomes]
rs66600814	0.93[ASN][1000 genomes]
rs67103742	0.95[ASN][1000 genomes]
rs72947641	0.93[ASN][1000 genomes]
rs72947669	0.98[ASN][1000 genomes]
rs72947685	0.93[ASN][1000 genomes]
rs73083803	0.86[AFR][1000 genomes]
rs73083810	0.93[ASN][1000 genomes]
rs73083812	0.93[ASN][1000 genomes]
rs7571041	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212237600-212248200	Weak transcription	Aorta	Aorta
2	chr2:212238000-212238800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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