Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10427172	0.98[ASN][1000 genomes]
rs11888548	0.98[ASN][1000 genomes]
rs11901831	0.98[ASN][1000 genomes]
rs12619707	0.89[ASN][1000 genomes]
rs16845944	0.98[ASN][1000 genomes]
rs1821661	0.98[ASN][1000 genomes]
rs1836739	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1836740	0.83[AMR][1000 genomes]
rs34588906	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56172792	0.98[ASN][1000 genomes]
rs58735954	0.98[ASN][1000 genomes]
rs59224996	0.95[ASN][1000 genomes]
rs60254210	0.98[ASN][1000 genomes]
rs66471203	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66600814	0.98[ASN][1000 genomes]
rs72947612	1.00[AMR][1000 genomes]
rs72947641	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947669	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72947685	0.89[ASN][1000 genomes]
rs73081789	0.83[AFR][1000 genomes]
rs73083810	0.98[ASN][1000 genomes]
rs73083812	0.98[ASN][1000 genomes]
rs73083834	1.00[AFR][1000 genomes]
rs7571041	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212231800-212233000	Enhancers	NHEK	skin
2	chr2:212231800-212233200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:212232000-212233200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:212232000-212233200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr2:212232000-212234400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:212232200-212233000	Enhancers	Fetal Kidney	kidney
7	chr2:212232200-212233000	Enhancers	GM12878-XiMat	blood
8	chr2:212232200-212233200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:212232400-212233200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:212232400-212233200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:212232400-212233400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:212232400-212233400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:212232400-212233600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:212232600-212233000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:212232800-212233000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:212232800-212233200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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