Variant report

Variant	rs60254210
Chromosome Location	chr2:212229396-212229397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10427172	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11888548	1.00[ASN][1000 genomes]
rs11901831	1.00[ASN][1000 genomes]
rs12619707	0.87[ASN][1000 genomes]
rs16845944	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821661	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836739	0.86[ASN][1000 genomes]
rs34588906	0.89[ASN][1000 genomes]
rs56172792	1.00[ASN][1000 genomes]
rs57874167	0.82[AFR][1000 genomes]
rs58735954	1.00[ASN][1000 genomes]
rs59224996	0.93[ASN][1000 genomes]
rs62180137	0.94[EUR][1000 genomes]
rs66471203	1.00[ASN][1000 genomes]
rs66600814	1.00[ASN][1000 genomes]
rs67103742	0.98[ASN][1000 genomes]
rs72947641	1.00[ASN][1000 genomes]
rs72947669	0.91[ASN][1000 genomes]
rs72947685	0.87[ASN][1000 genomes]
rs73083810	1.00[ASN][1000 genomes]
rs73083812	1.00[ASN][1000 genomes]
rs7571041	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212225800-212229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:212225800-212232000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:212227200-212229400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:212227200-212232400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:212228800-212229600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links