Variant report
| Variant | rs1821661 |
|---|---|
| Chromosome Location | chr2:212221462-212221463 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10427172 | 0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11888548 | 1.00[ASN][1000 genomes] |
| rs11901831 | 1.00[ASN][1000 genomes] |
| rs12619707 | 1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs16845944 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16846036 | 1.00[JPT][hapmap] |
| rs1836739 | 0.86[ASN][1000 genomes] |
| rs34588906 | 0.89[ASN][1000 genomes] |
| rs56172792 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58735954 | 1.00[ASN][1000 genomes] |
| rs59224996 | 0.93[ASN][1000 genomes] |
| rs60254210 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62180137 | 0.84[EUR][1000 genomes] |
| rs66471203 | 1.00[ASN][1000 genomes] |
| rs66600814 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67103742 | 0.98[ASN][1000 genomes] |
| rs72947641 | 1.00[ASN][1000 genomes] |
| rs72947669 | 0.91[ASN][1000 genomes] |
| rs72947685 | 0.87[ASN][1000 genomes] |
| rs73083806 | 0.84[AFR][1000 genomes] |
| rs73083810 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73083812 | 1.00[ASN][1000 genomes] |
| rs73083814 | 0.82[AFR][1000 genomes] |
| rs73083815 | 0.82[AFR][1000 genomes] |
| rs73985405 | 0.82[AFR][1000 genomes] |
| rs73988843 | 0.86[AFR][1000 genomes] |
| rs7569828 | 0.80[YRI][hapmap] |
| rs7571041 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834522 | chr2:212066442-212225328 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834523 | chr2:212163236-212331393 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv584313 | chr2:212176967-212224689 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv875776 | chr2:212196908-212264818 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS | Chromatin interactive regionmiRNA target site | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212214200-212223000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 2 | chr2:212214200-212232000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
