Variant report

Variant	rs12632757
Chromosome Location	chr3:145978062-145978063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10222588	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11926517	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398122	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1398125	0.88[ASN][1000 genomes]
rs1512080	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1606434	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2867082	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4475004	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4610193	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4681310	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6770057	0.80[ASN][1000 genomes]
rs6775520	0.88[ASN][1000 genomes]
rs6800307	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs925464	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289719	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9826591	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9830892	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9836419	0.84[ASN][1000 genomes]
rs9858823	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9859273	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9873891	0.84[ASN][1000 genomes]
rs9881755	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3333990	chr3:145950303-145982133	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145975600-145982200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:145975600-145982800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:145976000-145982800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:145976200-145983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:145977000-145984600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:145977400-145979000	Enhancers	Liver	Liver
7	chr3:145977600-145978600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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