Variant report

Variant	rs9289719
Chromosome Location	chr3:145983688-145983689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10222588	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11926517	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12632757	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1355570	0.88[ASN][1000 genomes]
rs1398122	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1512080	0.86[EUR][1000 genomes]
rs1606434	0.88[EUR][1000 genomes]
rs2867082	0.86[EUR][1000 genomes]
rs4475004	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs4610193	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4681310	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7645100	0.88[ASN][1000 genomes]
rs907490	0.88[ASN][1000 genomes]
rs925464	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9826591	0.86[EUR][1000 genomes]
rs9830892	0.86[EUR][1000 genomes]
rs9858823	0.87[EUR][1000 genomes]
rs9859273	0.81[EUR][1000 genomes]
rs9881755	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145977000-145984600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:145982200-145985400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:145982800-145984600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:145982800-145984600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:145982800-145984800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:145983400-145985200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:145983600-145983800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:145983600-145983800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:145983600-145983800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:145983600-145983800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:145983600-145984000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr3:145983600-145985000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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