Variant report

Variant	rs907490
Chromosome Location	chr3:145989839-145989840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10737947	0.84[EUR][1000 genomes]
rs10804710	0.89[EUR][1000 genomes]
rs10935613	0.87[EUR][1000 genomes]
rs10935614	0.89[EUR][1000 genomes]
rs10935615	0.89[EUR][1000 genomes]
rs10935616	0.89[EUR][1000 genomes]
rs11709096	0.89[EUR][1000 genomes]
rs11915448	0.87[EUR][1000 genomes]
rs11919011	0.89[EUR][1000 genomes]
rs12633074	0.89[EUR][1000 genomes]
rs1355570	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398122	0.81[ASN][1000 genomes]
rs1398125	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1512078	0.86[EUR][1000 genomes]
rs1512079	0.89[EUR][1000 genomes]
rs1512081	0.89[EUR][1000 genomes]
rs1512890	0.81[EUR][1000 genomes]
rs1877511	0.87[EUR][1000 genomes]
rs2175544	0.84[EUR][1000 genomes]
rs2175545	0.89[EUR][1000 genomes]
rs2867081	0.87[EUR][1000 genomes]
rs2867083	0.86[EUR][1000 genomes]
rs2867084	0.90[EUR][1000 genomes]
rs2903479	0.87[EUR][1000 genomes]
rs4273339	0.87[EUR][1000 genomes]
rs4488802	0.89[EUR][1000 genomes]
rs4681306	0.86[EUR][1000 genomes]
rs4681307	0.89[EUR][1000 genomes]
rs4681308	0.89[EUR][1000 genomes]
rs6440422	0.87[EUR][1000 genomes]
rs6775520	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6792732	0.89[EUR][1000 genomes]
rs6800307	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6805377	0.89[EUR][1000 genomes]
rs7430290	0.89[EUR][1000 genomes]
rs7621841	0.89[EUR][1000 genomes]
rs7632412	0.89[EUR][1000 genomes]
rs7634568	0.89[EUR][1000 genomes]
rs7643778	0.89[EUR][1000 genomes]
rs7645100	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289719	0.88[ASN][1000 genomes]
rs9813122	0.86[EUR][1000 genomes]
rs9825776	0.89[EUR][1000 genomes]
rs9826132	0.89[EUR][1000 genomes]
rs9826360	0.89[EUR][1000 genomes]
rs9838866	0.81[EUR][1000 genomes]
rs9845890	0.86[EUR][1000 genomes]
rs9851511	0.87[EUR][1000 genomes]
rs9855695	0.89[EUR][1000 genomes]
rs9863647	0.87[EUR][1000 genomes]
rs9867851	0.88[EUR][1000 genomes]
rs9875799	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145983800-145998800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:145984600-145990000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:145987000-145991800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:145987000-145992000	Weak transcription	Muscle Satellite Cultured Cells	--

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