Variant report

Variant	rs1355570
Chromosome Location	chr3:145991833-145991834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145979759..145981408-chr3:145991775..145993643,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10737947	0.85[EUR][1000 genomes]
rs10804710	0.86[EUR][1000 genomes]
rs10935613	0.88[EUR][1000 genomes]
rs10935614	0.86[EUR][1000 genomes]
rs10935615	0.86[EUR][1000 genomes]
rs10935616	0.86[EUR][1000 genomes]
rs11709096	0.86[EUR][1000 genomes]
rs11915448	0.88[EUR][1000 genomes]
rs11919011	0.86[EUR][1000 genomes]
rs12633074	0.89[EUR][1000 genomes]
rs1398122	0.81[ASN][1000 genomes]
rs1398125	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1512078	0.83[EUR][1000 genomes]
rs1512079	0.86[EUR][1000 genomes]
rs1512081	0.89[EUR][1000 genomes]
rs1877511	0.88[EUR][1000 genomes]
rs2175544	0.85[EUR][1000 genomes]
rs2175545	0.89[EUR][1000 genomes]
rs2867081	0.84[EUR][1000 genomes]
rs2867083	0.83[EUR][1000 genomes]
rs2867084	0.88[EUR][1000 genomes]
rs2903479	0.88[EUR][1000 genomes]
rs4273339	0.88[EUR][1000 genomes]
rs4488802	0.86[EUR][1000 genomes]
rs4681306	0.83[EUR][1000 genomes]
rs4681307	0.87[EUR][1000 genomes]
rs4681308	0.87[EUR][1000 genomes]
rs6440422	0.88[EUR][1000 genomes]
rs6775520	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6792732	0.89[EUR][1000 genomes]
rs6800307	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6805377	0.89[EUR][1000 genomes]
rs7430290	0.89[EUR][1000 genomes]
rs7621841	0.86[EUR][1000 genomes]
rs7632412	0.86[EUR][1000 genomes]
rs7634568	0.89[EUR][1000 genomes]
rs7643778	0.86[EUR][1000 genomes]
rs7645100	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907490	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289719	0.88[ASN][1000 genomes]
rs9813122	0.83[EUR][1000 genomes]
rs9825776	0.86[EUR][1000 genomes]
rs9826132	0.86[EUR][1000 genomes]
rs9826360	0.86[EUR][1000 genomes]
rs9838866	0.81[EUR][1000 genomes]
rs9845890	0.83[EUR][1000 genomes]
rs9851511	0.84[EUR][1000 genomes]
rs9855695	0.86[EUR][1000 genomes]
rs9863647	0.88[EUR][1000 genomes]
rs9867851	0.85[EUR][1000 genomes]
rs9875799	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145983800-145998800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:145987000-145992000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:145991000-145997600	Enhancers	HUVEC	blood vessel
4	chr3:145991800-145992400	Enhancers	Ovary	ovary
5	chr3:145991800-145992400	Enhancers	Right Atrium	heart
6	chr3:145991800-145992600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:145991800-145993000	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:145991800-145993400	Enhancers	Fetal Lung	lung
9	chr3:145991800-145993600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:145991800-145993600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:145991800-145993800	Enhancers	Fetal Stomach	stomach
12	chr3:145991800-145994400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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