Variant report

Variant	rs12638565
Chromosome Location	chr3:79403173-79403174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12629799	0.89[ASN][1000 genomes]
rs1489849	0.82[EUR][1000 genomes]
rs2130377	0.92[ASN][1000 genomes]
rs28417561	0.85[ASN][1000 genomes]
rs57012643	0.89[ASN][1000 genomes]
rs6766006	0.92[ASN][1000 genomes]
rs6782763	0.82[ASN][1000 genomes]
rs6788829	0.85[ASN][1000 genomes]
rs6788970	0.85[ASN][1000 genomes]
rs6801558	0.85[ASN][1000 genomes]
rs73122578	0.85[ASN][1000 genomes]
rs73122586	0.86[ASN][1000 genomes]
rs73122600	0.82[ASN][1000 genomes]
rs73125241	0.85[ASN][1000 genomes]
rs73125242	0.85[ASN][1000 genomes]
rs73125244	0.85[ASN][1000 genomes]
rs73125248	0.85[ASN][1000 genomes]
rs7618575	0.92[ASN][1000 genomes]
rs964137	0.82[ASN][1000 genomes]
rs9832396	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79401400-79405800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:79401600-79403400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:79402200-79404200	Enhancers	Fetal Heart	heart
4	chr3:79402600-79404200	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:79403000-79403800	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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