Variant report

Variant	rs964137
Chromosome Location	chr3:79346734-79346735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11127642	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11918896	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12629261	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12629799	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12635896	0.80[JPT][hapmap]
rs12638565	0.82[ASN][1000 genomes]
rs13067596	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs13073607	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13084290	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1387668	0.92[ASN][1000 genomes]
rs1489844	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1489849	0.87[JPT][hapmap]
rs1489850	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1565345	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs17044180	0.86[YRI][hapmap]
rs17395749	0.92[ASN][1000 genomes]
rs2130377	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs4411849	0.88[CHB][hapmap]
rs57012643	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6548616	0.87[JPT][hapmap]
rs6766006	0.88[CHB][hapmap]
rs6768393	0.83[YRI][hapmap]
rs6782763	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6785230	0.90[ASN][1000 genomes]
rs6788829	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6788970	0.81[ASN][1000 genomes]
rs6801558	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs6801676	0.84[AFR][1000 genomes]
rs716681	0.86[YRI][hapmap]
rs73110997	0.90[ASN][1000 genomes]
rs73112706	0.92[ASN][1000 genomes]
rs73122554	0.92[ASN][1000 genomes]
rs73122569	0.92[ASN][1000 genomes]
rs73122578	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73122579	0.89[ASN][1000 genomes]
rs73122586	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73122590	0.86[ASN][1000 genomes]
rs73122600	0.84[ASN][1000 genomes]
rs73125241	0.81[ASN][1000 genomes]
rs73125242	0.81[ASN][1000 genomes]
rs73125244	0.81[ASN][1000 genomes]
rs73125248	0.81[ASN][1000 genomes]
rs7610397	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7618575	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs902164	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9832396	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9842630	0.80[JPT][hapmap]
rs9855638	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79345600-79347200	Enhancers	NHDF-Ad	bronchial
2	chr3:79345600-79348800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:79345800-79347000	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:79345800-79347200	Enhancers	NH-A	brain
5	chr3:79345800-79347600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:79345800-79347800	Enhancers	HSMM	muscle
7	chr3:79346000-79346800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:79346000-79347200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:79346000-79347200	Enhancers	Osteobl	bone
10	chr3:79346000-79347400	Enhancers	Fetal Lung	lung
11	chr3:79346200-79346800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:79346200-79346800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:79346200-79346800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:79346200-79347000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:79346200-79347600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:79346200-79348800	Enhancers	Colon Smooth Muscle	Colon
17	chr3:79346400-79346800	Enhancers	Adipose Nuclei	Adipose
18	chr3:79346400-79346800	Enhancers	Fetal Kidney	kidney
19	chr3:79346400-79346800	Enhancers	Fetal Stomach	stomach
20	chr3:79346400-79346800	Enhancers	Hela-S3	cervix
21	chr3:79346400-79346800	Weak transcription	NHEK	skin
22	chr3:79346400-79347000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:79346400-79347000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:79346400-79347000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr3:79346400-79347000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:79346600-79346800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr3:79346600-79346800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr3:79346600-79347000	Enhancers	HMEC	breast
29	chr3:79346600-79347000	Active TSS	HSMMtube	muscle

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