Variant report

Variant	rs12629261
Chromosome Location	chr3:79319977-79319978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11127642	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11918896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11925199	0.92[YRI][hapmap]
rs12629799	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs13067596	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs13073607	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13084290	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1387668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1489844	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1489849	0.81[JPT][hapmap]
rs1489850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1565345	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17395749	0.98[ASN][1000 genomes]
rs2130377	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4411849	0.88[CHB][hapmap]
rs57012643	0.86[ASN][1000 genomes]
rs6548616	0.80[JPT][hapmap]
rs6764105	0.83[ASN][1000 genomes]
rs6766006	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs6782763	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6785230	1.00[ASN][1000 genomes]
rs6788829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6788970	0.90[ASN][1000 genomes]
rs6801558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73110997	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73112706	0.98[ASN][1000 genomes]
rs73122554	0.98[ASN][1000 genomes]
rs73122569	0.98[ASN][1000 genomes]
rs73122578	0.87[ASN][1000 genomes]
rs73122579	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73122586	0.89[ASN][1000 genomes]
rs73122590	0.95[ASN][1000 genomes]
rs73122600	0.93[ASN][1000 genomes]
rs73125241	0.90[ASN][1000 genomes]
rs73125242	0.90[ASN][1000 genomes]
rs73125244	0.90[ASN][1000 genomes]
rs73125248	0.90[ASN][1000 genomes]
rs7610397	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7618575	0.83[ASN][1000 genomes]
rs902164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs964137	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs9832396	0.89[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs9842630	0.86[JPT][hapmap]
rs9855638	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79319000-79320000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:79319400-79321600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:79319800-79321400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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