Variant report

Variant	rs6766006
Chromosome Location	chr3:79402152-79402153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:79399794..79402189-chr3:79403043..79405665,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11918896	0.88[CHB][hapmap]
rs12629261	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs12629799	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs12630849	0.84[JPT][hapmap]
rs12633859	0.81[ASN][1000 genomes]
rs12638565	0.92[ASN][1000 genomes]
rs12639058	0.82[ASN][1000 genomes]
rs13067596	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs13073607	0.90[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs13084290	0.91[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs1387668	0.81[ASN][1000 genomes]
rs1489844	0.85[CHB][hapmap]
rs1489849	0.87[JPT][hapmap]
rs1489850	0.88[CHB][hapmap]
rs1546038	0.84[JPT][hapmap]
rs1565345	0.88[CHB][hapmap]
rs17395749	0.81[ASN][1000 genomes]
rs2130376	0.86[JPT][hapmap]
rs2130377	0.90[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4411849	0.86[JPT][hapmap]
rs57012643	0.81[ASN][1000 genomes]
rs6548616	0.85[JPT][hapmap]
rs6764105	0.85[ASN][1000 genomes]
rs6782763	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs6785230	0.82[ASN][1000 genomes]
rs6788829	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs6788970	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6801558	0.88[CHB][hapmap];0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73110997	0.82[ASN][1000 genomes]
rs73112706	0.81[ASN][1000 genomes]
rs73122554	0.81[ASN][1000 genomes]
rs73122569	0.81[ASN][1000 genomes]
rs73122579	0.84[ASN][1000 genomes]
rs73122590	0.84[ASN][1000 genomes]
rs73122600	0.89[ASN][1000 genomes]
rs73125241	0.92[ASN][1000 genomes]
rs73125242	0.92[ASN][1000 genomes]
rs73125244	0.92[ASN][1000 genomes]
rs73125248	0.92[ASN][1000 genomes]
rs7610397	0.88[CHB][hapmap]
rs7618575	0.84[ASN][1000 genomes]
rs902164	0.88[CHB][hapmap]
rs964137	0.88[CHB][hapmap]
rs9842630	0.92[JPT][hapmap]
rs9855638	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79401400-79402600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:79401400-79405800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:79401600-79403400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links