Variant report

Variant	rs73125244
Chromosome Location	chr3:79380050-79380051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12629261	0.90[ASN][1000 genomes]
rs12629799	0.89[ASN][1000 genomes]
rs12638565	0.85[ASN][1000 genomes]
rs1387668	0.88[ASN][1000 genomes]
rs17395749	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2130377	0.92[ASN][1000 genomes]
rs57012643	0.89[ASN][1000 genomes]
rs6764105	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6766006	0.92[ASN][1000 genomes]
rs6782763	0.97[ASN][1000 genomes]
rs6785230	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6788829	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788970	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801558	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73110997	0.90[ASN][1000 genomes]
rs73112706	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73122554	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73122569	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73122578	0.84[ASN][1000 genomes]
rs73122579	0.92[ASN][1000 genomes]
rs73122586	0.86[ASN][1000 genomes]
rs73122590	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73122600	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73125241	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73125242	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73125248	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618575	0.92[ASN][1000 genomes]
rs964137	0.81[ASN][1000 genomes]
rs9832396	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79377000-79385400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:79378200-79385400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:79379600-79380400	Enhancers	Adipose Nuclei	Adipose
4	chr3:79379800-79380200	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr3:79379800-79380200	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:79380000-79380200	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links