Variant report
| Variant | rs1387668 |
|---|---|
| Chromosome Location | chr3:79320406-79320407 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12629261 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12629799 | 0.84[ASN][1000 genomes] |
| rs17395749 | 1.00[ASN][1000 genomes] |
| rs2130377 | 0.81[ASN][1000 genomes] |
| rs57012643 | 0.84[ASN][1000 genomes] |
| rs6764105 | 0.82[ASN][1000 genomes] |
| rs6766006 | 0.81[ASN][1000 genomes] |
| rs6782763 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6785230 | 0.98[ASN][1000 genomes] |
| rs6788829 | 0.88[ASN][1000 genomes] |
| rs6788970 | 0.88[ASN][1000 genomes] |
| rs6801558 | 0.88[ASN][1000 genomes] |
| rs73110997 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73112706 | 1.00[ASN][1000 genomes] |
| rs73122554 | 1.00[ASN][1000 genomes] |
| rs73122569 | 1.00[ASN][1000 genomes] |
| rs73122578 | 0.89[ASN][1000 genomes] |
| rs73122579 | 0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73122586 | 0.87[ASN][1000 genomes] |
| rs73122590 | 0.93[ASN][1000 genomes] |
| rs73122600 | 0.92[ASN][1000 genomes] |
| rs73125241 | 0.88[ASN][1000 genomes] |
| rs73125242 | 0.88[ASN][1000 genomes] |
| rs73125244 | 0.88[ASN][1000 genomes] |
| rs73125248 | 0.88[ASN][1000 genomes] |
| rs7618575 | 0.81[ASN][1000 genomes] |
| rs964137 | 0.92[ASN][1000 genomes] |
| rs9832396 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2763281 | chr3:79246361-79489765 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv460727 | chr3:79264611-79406519 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv590736 | chr3:79264611-79406519 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv460730 | chr3:79286801-79411014 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv590737 | chr3:79286801-79411014 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:79319400-79321600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr3:79319800-79321400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 3 | chr3:79320000-79321600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
