Variant report

Variant	rs17395749
Chromosome Location	chr3:79348510-79348511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12629261	0.98[ASN][1000 genomes]
rs12629799	0.84[ASN][1000 genomes]
rs1387668	1.00[ASN][1000 genomes]
rs2130377	0.81[ASN][1000 genomes]
rs57012643	0.84[ASN][1000 genomes]
rs6764105	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6766006	0.81[ASN][1000 genomes]
rs6782763	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6785230	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6788829	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6788970	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6801558	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73110997	0.98[ASN][1000 genomes]
rs73112706	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122569	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122578	0.89[ASN][1000 genomes]
rs73122579	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73122586	0.87[ASN][1000 genomes]
rs73122590	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73122600	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73125241	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73125242	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73125244	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73125248	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7618575	0.81[ASN][1000 genomes]
rs964137	0.92[ASN][1000 genomes]
rs9832396	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79345600-79348800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:79346200-79348800	Enhancers	Colon Smooth Muscle	Colon
3	chr3:79347600-79351000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:79348200-79348600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:79348400-79348600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:79348400-79348600	Enhancers	HSMM	muscle

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