Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:79399794..79402189-chr3:79403043..79405665,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11127642	0.88[JPT][hapmap]
rs11918896	0.82[JPT][hapmap]
rs12629261	0.81[JPT][hapmap]
rs12629799	0.87[JPT][hapmap]
rs12630849	0.87[JPT][hapmap]
rs12633859	0.82[JPT][hapmap]
rs12635896	0.93[JPT][hapmap]
rs12638565	0.82[EUR][1000 genomes]
rs13067596	0.93[JPT][hapmap]
rs13073607	0.93[JPT][hapmap]
rs13084290	0.94[JPT][hapmap]
rs1546038	0.87[JPT][hapmap]
rs1565345	0.81[JPT][hapmap]
rs2130376	0.87[JPT][hapmap]
rs2130377	0.93[JPT][hapmap]
rs28417561	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4411849	0.87[JPT][hapmap]
rs6548616	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs6766006	0.87[JPT][hapmap]
rs6782763	0.81[JPT][hapmap]
rs6788829	0.81[JPT][hapmap]
rs6801558	0.80[JPT][hapmap]
rs7610397	0.80[JPT][hapmap]
rs902164	0.80[JPT][hapmap]
rs964137	0.87[JPT][hapmap]
rs9832396	0.87[JPT][hapmap]
rs9842630	0.82[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9843467	0.82[JPT][hapmap]
rs9855638	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79401400-79405800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:79403600-79405600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:79403800-79408600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:79404000-79411200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:79404200-79408000	Weak transcription	Fetal Heart	heart
6	chr3:79404200-79411200	Weak transcription	Rectal Smooth Muscle	rectum

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