Variant report
| Variant | rs9855638 |
|---|---|
| Chromosome Location | chr3:79399063-79399064 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11127642 | 0.87[JPT][hapmap] |
| rs11918896 | 0.81[JPT][hapmap] |
| rs12629261 | 0.81[JPT][hapmap] |
| rs12629799 | 0.87[JPT][hapmap] |
| rs12630849 | 0.87[JPT][hapmap] |
| rs12633859 | 0.81[JPT][hapmap] |
| rs12635896 | 0.93[JPT][hapmap] |
| rs12638565 | 0.85[ASN][1000 genomes] |
| rs13067596 | 0.93[JPT][hapmap] |
| rs13073607 | 0.93[JPT][hapmap] |
| rs13084290 | 0.94[JPT][hapmap] |
| rs1489849 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1546038 | 0.87[JPT][hapmap] |
| rs1565345 | 0.81[JPT][hapmap] |
| rs2130376 | 0.87[JPT][hapmap] |
| rs2130377 | 0.93[JPT][hapmap] |
| rs28417561 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4411849 | 0.87[JPT][hapmap] |
| rs6548616 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6766006 | 0.86[JPT][hapmap] |
| rs6782763 | 0.81[JPT][hapmap] |
| rs6788829 | 0.81[JPT][hapmap] |
| rs6801558 | 0.80[JPT][hapmap] |
| rs7610397 | 0.80[JPT][hapmap] |
| rs902164 | 0.80[JPT][hapmap] |
| rs964137 | 0.87[JPT][hapmap] |
| rs9832396 | 0.87[JPT][hapmap] |
| rs9842630 | 0.81[CHB][hapmap];0.93[JPT][hapmap] |
| rs9843467 | 0.81[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2763281 | chr3:79246361-79489765 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv460727 | chr3:79264611-79406519 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv590736 | chr3:79264611-79406519 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv460730 | chr3:79286801-79411014 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv590737 | chr3:79286801-79411014 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
