Variant report

Variant	rs4411849
Chromosome Location	chr3:79463757-79463758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11918896	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs12629261	0.88[CHB][hapmap]
rs12629799	0.88[CHB][hapmap]
rs12630849	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12633859	0.88[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs12635896	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs12639058	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13067596	0.93[JPT][hapmap]
rs13073607	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs13084290	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs1489844	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1489849	0.87[JPT][hapmap]
rs1489850	0.88[CHB][hapmap]
rs1546038	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1565345	0.88[CHB][hapmap]
rs2130375	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2130376	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2130377	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs35115214	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4314135	1.00[CEU][hapmap]
rs4479556	1.00[CEU][hapmap]
rs6548616	0.86[JPT][hapmap]
rs66842409	0.81[EUR][1000 genomes]
rs66851083	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6766006	0.86[JPT][hapmap]
rs6782763	0.88[CHB][hapmap]
rs6788829	0.88[CHB][hapmap]
rs6801558	0.88[CHB][hapmap]
rs73125279	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73129003	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73131030	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73131033	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73131045	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7610397	0.88[CHB][hapmap]
rs902164	0.88[CHB][hapmap]
rs964137	0.88[CHB][hapmap]
rs9842630	0.93[JPT][hapmap]
rs9843467	0.93[JPT][hapmap]
rs9855638	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3381015	chr3:79425678-79545174	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998248	chr3:79426615-79554963	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834747	chr3:79441211-79591923	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79462000-79463800	Weak transcription	Fetal Brain Female	brain
2	chr3:79462000-79464000	Weak transcription	Fetal Lung	lung
3	chr3:79462800-79463800	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:79463000-79463800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:79463000-79465000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:79463200-79464400	Enhancers	Adipose Nuclei	Adipose
7	chr3:79463200-79465000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:79463400-79464000	Enhancers	Liver	Liver

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