Variant report

Variant rs12646380
Chromosome Location chr4:9991502-9991503
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:9963400-9996400 Weak transcription Adipose Nuclei Adipose
2 chr4:9977800-10003600 Weak transcription Fetal Muscle Leg muscle
3 chr4:9978200-9996400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr4:9978800-9995400 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr4:9979800-9995600 Weak transcription Colonic Mucosa Colon
6 chr4:9980800-10007200 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr4:9981400-9991800 Weak transcription Brain Angular Gyrus brain
8 chr4:9982800-10002800 Weak transcription Gastric stomach
9 chr4:9983000-9992200 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr4:9983000-9995600 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr4:9985800-9997400 Strong transcription HMEC breast
12 chr4:9987400-9996400 Weak transcription Aorta Aorta
13 chr4:9987600-9998000 Weak transcription Ovary ovary
14 chr4:9987600-10008000 Weak transcription Stomach Smooth Muscle stomach
15 chr4:9988000-9995000 Weak transcription Esophagus oesophagus
16 chr4:9988200-9991600 Weak transcription NHEK skin
17 chr4:9988200-9993800 Weak transcription Liver Liver
18 chr4:9988200-9996400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr4:9988400-9996800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr4:9989200-9999600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr4:9989600-9991800 Enhancers Brain Hippocampus Middle brain
22 chr4:9989600-9993200 Enhancers Right Atrium heart
23 chr4:9989600-9997600 Strong transcription HepG2 liver
24 chr4:9989600-9997800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr4:9989600-9998800 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr4:9989800-9991600 Enhancers Colon Smooth Muscle Colon
27 chr4:9989800-9993600 Weak transcription Duodenum Mucosa Duodenum
28 chr4:9990000-9991600 Weak transcription Fetal Intestine Large intestine
29 chr4:9990000-9997600 Weak transcription Stomach Mucosa stomach
30 chr4:9990200-9991800 Weak transcription Monocytes-CD14+_RO01746 blood
31 chr4:9990200-9993400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr4:9990400-9992200 Weak transcription Fetal Brain Female brain
33 chr4:9990400-9993000 Enhancers GM12878-XiMat blood
34 chr4:9990400-9999600 Weak transcription Fetal Stomach stomach
35 chr4:9990600-9993000 Enhancers Brain Inferior Temporal Lobe brain
36 chr4:9990800-9995200 Strong transcription Fetal Intestine Small intestine
37 chr4:9991000-9992000 Strong transcription Primary monocytes fromperipheralblood blood
38 chr4:9991200-9991800 Enhancers Brain Cingulate Gyrus brain
39 chr4:9991200-9991800 Enhancers Skeletal Muscle Male skeletal muscle
40 chr4:9991200-9992000 Enhancers Left Ventricle heart
41 chr4:9991400-9991800 Enhancers Psoas Muscle Psoas
42 chr4:9991400-9992600 Enhancers Brain Anterior Caudate brain
43 chr4:9991400-9992800 Enhancers Brain Substantia Nigra brain
44 chr4:9991400-10001400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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