Variant report

Variant	rs1267476
Chromosome Location	chr11:34326471-34326472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34310476..34312267-chr11:34326192..34328969,2	MCF-7	breast:
2	chr11:34306498..34309319-chr11:34324159..34326964,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1271113	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1622989	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2025082	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2611140	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755367	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34321600-34328800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:34322000-34328600	Weak transcription	Liver	Liver
3	chr11:34322200-34328600	Weak transcription	Fetal Kidney	kidney
4	chr11:34322200-34337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:34322800-34328600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:34322800-34329000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:34323000-34329600	Weak transcription	Primary T cells from cord blood	blood
8	chr11:34323200-34328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:34323200-34328600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:34323200-34328600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:34323200-34328600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:34323400-34328600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:34323400-34328600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:34323400-34328600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:34323400-34331600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:34323400-34331800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:34323600-34328600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:34323800-34334200	Weak transcription	Brain Substantia Nigra	brain
19	chr11:34324200-34328600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:34324200-34329600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:34324600-34328400	Weak transcription	Placenta	Placenta
22	chr11:34324600-34328600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:34324600-34328800	Weak transcription	Aorta	Aorta
24	chr11:34324600-34329600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:34324600-34330000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:34324600-34335000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:34324600-34336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:34324800-34328600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:34324800-34328600	Weak transcription	Right Ventricle	heart
30	chr11:34324800-34329600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:34324800-34329600	Weak transcription	Hela-S3	cervix
32	chr11:34324800-34329600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:34324800-34330400	Weak transcription	HepG2	liver
34	chr11:34325000-34326600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:34325000-34326600	Weak transcription	NH-A	brain
36	chr11:34325000-34326800	Weak transcription	Fetal Stomach	stomach
37	chr11:34325000-34328600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:34325000-34329000	Weak transcription	HMEC	breast
39	chr11:34325000-34329600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:34325000-34329600	Weak transcription	NHDF-Ad	bronchial
41	chr11:34325000-34329800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:34325000-34329800	Weak transcription	Fetal Thymus	thymus
43	chr11:34325000-34329800	Weak transcription	GM12878-XiMat	blood
44	chr11:34325000-34329800	Weak transcription	HSMMtube	muscle
45	chr11:34325000-34330000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:34325000-34330200	Weak transcription	Right Atrium	heart
47	chr11:34325000-34330600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:34325200-34326600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:34325200-34326600	Weak transcription	HSMM	muscle
50	chr11:34325200-34329600	Weak transcription	A549	lung

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