Variant report

Variant	rs1271113
Chromosome Location	chr11:34328931-34328932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34310476..34312267-chr11:34326192..34328969,2	MCF-7	breast:
2	chr11:34323353..34325328-chr11:34327561..34330383,2	MCF-7	breast:
3	chr11:34295969..34298454-chr11:34328816..34331408,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1267476	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1622989	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2025082	0.96[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2611140	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755367	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34322200-34337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34322800-34329000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:34323000-34329600	Weak transcription	Primary T cells from cord blood	blood
4	chr11:34323400-34331600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:34323400-34331800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:34323800-34334200	Weak transcription	Brain Substantia Nigra	brain
7	chr11:34324200-34329600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:34324600-34329600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:34324600-34330000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:34324600-34335000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:34324600-34336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:34324800-34329600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:34324800-34329600	Weak transcription	Hela-S3	cervix
14	chr11:34324800-34329600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:34324800-34330400	Weak transcription	HepG2	liver
16	chr11:34325000-34329000	Weak transcription	HMEC	breast
17	chr11:34325000-34329600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:34325000-34329600	Weak transcription	NHDF-Ad	bronchial
19	chr11:34325000-34329800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:34325000-34329800	Weak transcription	Fetal Thymus	thymus
21	chr11:34325000-34329800	Weak transcription	GM12878-XiMat	blood
22	chr11:34325000-34329800	Weak transcription	HSMMtube	muscle
23	chr11:34325000-34330000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:34325000-34330200	Weak transcription	Right Atrium	heart
25	chr11:34325000-34330600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:34325200-34329600	Weak transcription	A549	lung
27	chr11:34325200-34329600	Weak transcription	Osteobl	bone
28	chr11:34325200-34330600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:34325200-34330800	Weak transcription	Fetal Heart	heart
30	chr11:34325800-34330600	Weak transcription	Fetal Lung	lung
31	chr11:34326600-34330600	Weak transcription	Left Ventricle	heart
32	chr11:34326800-34330200	Weak transcription	Psoas Muscle	Psoas
33	chr11:34327000-34329800	Weak transcription	HSMM	muscle
34	chr11:34327000-34330200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:34327000-34331800	Weak transcription	Fetal Brain Male	brain
36	chr11:34327200-34329600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:34327200-34329600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:34327200-34329800	Weak transcription	NH-A	brain
39	chr11:34327200-34330600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:34327200-34330600	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:34327200-34330600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:34327200-34331600	Weak transcription	Fetal Brain Female	brain
43	chr11:34327200-34335800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:34327200-34340400	Weak transcription	Gastric	stomach
45	chr11:34328400-34330000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr11:34328400-34331400	Enhancers	Placenta	Placenta
47	chr11:34328600-34329000	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr11:34328600-34329000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:34328600-34329000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:34328600-34329000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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