Variant report

Variant	rs1622989
Chromosome Location	chr11:34325321-34325322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34306498..34309319-chr11:34324159..34326964,2	MCF-7	breast:
2	chr11:34316876..34318474-chr11:34324018..34325660,2	MCF-7	breast:
3	chr11:34323353..34325328-chr11:34327561..34330383,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1267476	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1271113	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2025082	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2104128	0.83[ASN][1000 genomes]
rs2611140	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4755367	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34320400-34325400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:34321600-34328800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:34322000-34328600	Weak transcription	Liver	Liver
4	chr11:34322200-34328600	Weak transcription	Fetal Kidney	kidney
5	chr11:34322200-34337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:34322800-34328600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:34322800-34329000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:34323000-34326400	Weak transcription	Fetal Brain Female	brain
9	chr11:34323000-34329600	Weak transcription	Primary T cells from cord blood	blood
10	chr11:34323200-34328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:34323200-34328600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:34323200-34328600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:34323200-34328600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:34323400-34326200	Weak transcription	Fetal Brain Male	brain
15	chr11:34323400-34328600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:34323400-34328600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:34323400-34328600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:34323400-34331600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:34323400-34331800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:34323600-34325400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:34323600-34328600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:34323800-34334200	Weak transcription	Brain Substantia Nigra	brain
23	chr11:34324200-34328600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:34324200-34329600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:34324600-34325400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:34324600-34328400	Weak transcription	Placenta	Placenta
27	chr11:34324600-34328600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:34324600-34328800	Weak transcription	Aorta	Aorta
29	chr11:34324600-34329600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:34324600-34330000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:34324600-34335000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:34324600-34336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:34324800-34326400	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:34324800-34328600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:34324800-34328600	Weak transcription	Right Ventricle	heart
36	chr11:34324800-34329600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:34324800-34329600	Weak transcription	Hela-S3	cervix
38	chr11:34324800-34329600	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:34324800-34330400	Weak transcription	HepG2	liver
40	chr11:34325000-34326200	Weak transcription	Left Ventricle	heart
41	chr11:34325000-34326200	Weak transcription	Psoas Muscle	Psoas
42	chr11:34325000-34326200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:34325000-34326200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:34325000-34326600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:34325000-34326600	Weak transcription	NH-A	brain
46	chr11:34325000-34326800	Weak transcription	Fetal Stomach	stomach
47	chr11:34325000-34328600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:34325000-34329000	Weak transcription	HMEC	breast
49	chr11:34325000-34329600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:34325000-34329600	Weak transcription	NHDF-Ad	bronchial

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