Variant report

Variant	rs2025082
Chromosome Location	chr11:34332025-34332026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34331497..34333782-chr11:34370435..34371982,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1267476	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1271113	0.96[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1622989	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2104128	0.86[ASN][1000 genomes]
rs2611140	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4755367	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34322200-34337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34323800-34334200	Weak transcription	Brain Substantia Nigra	brain
3	chr11:34324600-34335000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:34324600-34336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:34327200-34335800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:34327200-34340400	Weak transcription	Gastric	stomach
7	chr11:34328600-34332400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr11:34328600-34333000	Enhancers	Liver	Liver
9	chr11:34329600-34332200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:34329600-34332400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:34329600-34332600	Enhancers	A549	lung
12	chr11:34329600-34332800	Enhancers	Hela-S3	cervix
13	chr11:34329800-34332400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:34329800-34332800	Enhancers	Fetal Thymus	thymus
15	chr11:34329800-34336200	Enhancers	Thymus	Thymus
16	chr11:34330000-34332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:34330000-34332800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:34330000-34334400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:34330200-34333000	Enhancers	Psoas Muscle	Psoas
20	chr11:34330200-34333000	Enhancers	Right Atrium	heart
21	chr11:34330600-34333400	Enhancers	Fetal Lung	lung
22	chr11:34330600-34338200	Enhancers	Fetal Muscle Leg	muscle
23	chr11:34330600-34340000	Weak transcription	Aorta	Aorta
24	chr11:34330600-34340200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:34330800-34332400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:34330800-34339000	Enhancers	Fetal Heart	heart
27	chr11:34330800-34339600	Weak transcription	Fetal Intestine Small	intestine
28	chr11:34331000-34332200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr11:34331000-34334200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:34331000-34334200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:34331000-34334400	Weak transcription	GM12878-XiMat	blood
32	chr11:34331000-34334600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:34331200-34332200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr11:34331200-34332200	Weak transcription	HSMMtube	muscle
35	chr11:34331200-34334600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr11:34331200-34334600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:34331200-34335600	Weak transcription	HSMM	muscle
38	chr11:34331200-34336200	Weak transcription	NHDF-Ad	bronchial
39	chr11:34331200-34337800	Weak transcription	Adipose Nuclei	Adipose
40	chr11:34331400-34332200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:34331400-34332400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr11:34331400-34332600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr11:34331400-34332800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr11:34331600-34332200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr11:34331600-34332200	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr11:34331600-34332400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:34331600-34332600	Enhancers	H9 Cell Line	embryonic stem cell
48	chr11:34331600-34332800	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr11:34331600-34335800	Enhancers	Left Ventricle	heart
50	chr11:34331800-34332200	Enhancers	Fetal Brain Male	brain

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