Variant report

Variant	rs4755367
Chromosome Location	chr11:34324297-34324298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34306498..34309319-chr11:34324159..34326964,2	MCF-7	breast:
2	chr11:34316876..34318474-chr11:34324018..34325660,2	MCF-7	breast:
3	chr11:34323353..34325328-chr11:34327561..34330383,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1267476	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1271113	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1622989	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2025082	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2104128	0.81[ASN][1000 genomes]
rs2611140	0.80[GIH][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34311200-34324400	Weak transcription	HepG2	liver
2	chr11:34320400-34325000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:34320400-34325200	Enhancers	Fetal Lung	lung
4	chr11:34320400-34325400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:34320600-34324600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:34320600-34324800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:34320600-34325000	Enhancers	HSMMtube	muscle
8	chr11:34320800-34324800	Enhancers	Fetal Muscle Leg	muscle
9	chr11:34321600-34324800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:34321600-34328800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:34321800-34325200	Enhancers	Fetal Heart	heart
12	chr11:34322000-34328600	Weak transcription	Liver	Liver
13	chr11:34322200-34325000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:34322200-34325200	Enhancers	HSMM	muscle
15	chr11:34322200-34328600	Weak transcription	Fetal Kidney	kidney
16	chr11:34322200-34337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:34322400-34325000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:34322600-34324600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:34322600-34325000	Enhancers	Fetal Stomach	stomach
20	chr11:34322600-34325000	Enhancers	NHLF	lung
21	chr11:34322800-34324600	Enhancers	Primary hematopoietic stem cells	blood
22	chr11:34322800-34324600	Enhancers	Brain Germinal Matrix	brain
23	chr11:34322800-34324800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:34322800-34324800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr11:34322800-34325000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:34322800-34325000	Enhancers	GM12878-XiMat	blood
27	chr11:34322800-34328600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:34322800-34329000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr11:34323000-34324800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:34323000-34325000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:34323000-34325200	Enhancers	Osteobl	bone
32	chr11:34323000-34326400	Weak transcription	Fetal Brain Female	brain
33	chr11:34323000-34329600	Weak transcription	Primary T cells from cord blood	blood
34	chr11:34323200-34324400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:34323200-34325000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:34323200-34325000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:34323200-34325000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:34323200-34325000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr11:34323200-34328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:34323200-34328600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:34323200-34328600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:34323200-34328600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:34323400-34325000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr11:34323400-34326200	Weak transcription	Fetal Brain Male	brain
45	chr11:34323400-34328600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:34323400-34328600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr11:34323400-34328600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:34323400-34331600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:34323400-34331800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:34323600-34324600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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