The 2.0 version of rSNPBase

Variant report

Variant rs12693429
Chromosome Location chr2:153504552-153504553
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:153457200-153505000 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr2:153469000-153509800 Weak transcription Small Intestine intestine
3 chr2:153471000-153507000 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr2:153472000-153522000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr2:153474400-153505000 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr2:153487600-153505000 Weak transcription Fetal Thymus thymus
7 chr2:153492000-153508200 Weak transcription Primary B cells from cord blood blood
8 chr2:153492400-153506200 Weak transcription Monocytes-CD14+_RO01746 blood
9 chr2:153492400-153513400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr2:153492800-153504600 Strong transcription HUES6 Cell Line embryonic stem cell
11 chr2:153495000-153506400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr2:153495400-153517400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr2:153496000-153506400 Weak transcription Primary hematopoietic stem cells blood
14 chr2:153497000-153531800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr2:153497200-153514000 Weak transcription Colonic Mucosa Colon
16 chr2:153497200-153521200 Weak transcription Esophagus oesophagus
17 chr2:153497400-153516200 Weak transcription Spleen Spleen
18 chr2:153498200-153507000 Weak transcription HUVEC blood vessel
19 chr2:153498400-153512200 Weak transcription Thymus Thymus
20 chr2:153499000-153507600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr2:153499200-153504600 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr2:153499800-153507200 Weak transcription Primary T cells from cord blood blood
23 chr2:153500000-153512200 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr2:153500400-153517200 Weak transcription Hela-S3 cervix
25 chr2:153500800-153509800 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr2:153501000-153505200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr2:153501200-153508400 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr2:153501400-153504600 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr2:153501400-153531800 Weak transcription Aorta Aorta
30 chr2:153502200-153504800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr2:153502200-153508400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr2:153502600-153507200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr2:153502600-153507200 Weak transcription GM12878-XiMat blood
34 chr2:153502800-153505000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
35 chr2:153502800-153505000 Enhancers NH-A brain
36 chr2:153502800-153505600 Enhancers Cortex derived primary cultured neurospheres brain
37 chr2:153503000-153504600 Enhancers Osteobl bone
38 chr2:153503000-153504800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr2:153503000-153505400 Genic enhancers Brain Anterior Caudate brain
40 chr2:153503000-153510600 Weak transcription Fetal Muscle Trunk muscle
41 chr2:153503200-153505200 Enhancers NHLF lung
42 chr2:153503200-153505400 Genic enhancers Brain Cingulate Gyrus brain
43 chr2:153503200-153505400 Enhancers Brain Hippocampus Middle brain
44 chr2:153503200-153505400 Genic enhancers Brain Substantia Nigra brain
45 chr2:153503200-153505600 Enhancers Pancreatic Islets Pancreatic Islet
46 chr2:153503200-153507000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr2:153503200-153508400 Weak transcription Primary T helper naive cells fromperipheralblood blood
48 chr2:153503200-153512200 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr2:153503400-153505000 Enhancers Brain Germinal Matrix brain
50 chr2:153503400-153509800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015