Variant report

Variant	rs13022436
Chromosome Location	chr2:153541470-153541471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153539832..153542814-chr2:153551241..153553526,2	K562	blood:
2	chr2:153539766..153542377-chr2:153567671..153570144,2	MCF-7	breast:
3	chr2:153535562..153537103-chr2:153539449..153541878,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10497113	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931263	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931271	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931279	0.83[EUR][1000 genomes]
rs1135617	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674911	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676069	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694512	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11901227	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475871	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12478681	0.84[ASN][1000 genomes]
rs12693429	0.84[ASN][1000 genomes]
rs12989903	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12995388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12999331	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13003670	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13006652	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014141	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017131	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023779	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13023975	0.83[EUR][1000 genomes]
rs1370499	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16831440	0.83[EUR][1000 genomes]
rs16831456	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328776	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400456	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17400938	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400952	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400980	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2346551	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34199006	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454505	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469468	0.84[EUR][1000 genomes]
rs34619076	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34775858	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35002744	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35421285	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754252	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894330	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35937874	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36107565	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36122595	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811568	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3811569	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4575677	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434172	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66492085	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66849546	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6728189	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6736003	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71417232	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71417235	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72871148	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7591590	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7598878	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834421	chr2:153470109-153664235	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3693438	chr2:153505376-153718246	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153506200-153546800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:153507000-153541600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:153508000-153542000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:153508000-153550800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr2:153509200-153551200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:153518400-153551000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:153518800-153558000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:153523000-153557800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:153523400-153571800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:153525000-153557800	Weak transcription	Lung	lung
11	chr2:153525000-153571800	Weak transcription	Small Intestine	intestine
12	chr2:153532400-153550800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:153533200-153549000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr2:153533200-153551000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:153533200-153551600	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:153533200-153558000	Weak transcription	Colonic Mucosa	Colon
17	chr2:153533400-153546800	Weak transcription	Fetal Intestine Small	intestine
18	chr2:153533400-153549600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:153533400-153557800	Weak transcription	Fetal Stomach	stomach
20	chr2:153533400-153558600	Weak transcription	Aorta	Aorta
21	chr2:153533400-153571600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:153533800-153550200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr2:153533800-153558000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr2:153533800-153572600	Weak transcription	Fetal Brain Male	brain
25	chr2:153534000-153546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:153536000-153546000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr2:153536000-153546000	Weak transcription	Fetal Intestine Large	intestine
28	chr2:153536000-153572600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr2:153536200-153543400	Weak transcription	Fetal Kidney	kidney
30	chr2:153536200-153550200	Weak transcription	NHLF	lung
31	chr2:153537200-153542600	Weak transcription	Psoas Muscle	Psoas
32	chr2:153537200-153543600	Weak transcription	NHEK	skin
33	chr2:153537200-153549000	Weak transcription	Fetal Muscle Leg	muscle
34	chr2:153537200-153557200	Weak transcription	Thymus	Thymus
35	chr2:153537400-153550600	Weak transcription	Brain Hippocampus Middle	brain
36	chr2:153537400-153565400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr2:153537600-153543600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr2:153537600-153548600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:153537600-153550600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr2:153537600-153557400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:153537600-153558400	Weak transcription	Fetal Brain Female	brain
42	chr2:153537600-153571800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr2:153537800-153542800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:153537800-153543200	Weak transcription	Osteobl	bone
45	chr2:153537800-153543600	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr2:153537800-153543800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr2:153537800-153544000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr2:153537800-153545000	Weak transcription	HMEC	breast
49	chr2:153537800-153545200	Weak transcription	NH-A	brain
50	chr2:153537800-153548400	Weak transcription	Adipose Nuclei	Adipose

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