Variant report

Variant	rs12700728
Chromosome Location	chr7:26427588-26427589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13225178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13225244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13226088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13240682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13241914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13242356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13243741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13245210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1731282	1.00[AFR][1000 genomes]
rs34611800	1.00[AFR][1000 genomes]
rs36062166	1.00[AFR][1000 genomes]
rs71532933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73072216	1.00[AFR][1000 genomes]
rs73072219	1.00[AFR][1000 genomes]
rs73072220	1.00[AFR][1000 genomes]
rs73072293	1.00[AFR][1000 genomes]
rs73072295	1.00[AFR][1000 genomes]
rs73074106	1.00[AFR][1000 genomes]
rs73074107	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26418600-26436000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:26427000-26427600	Enhancers	Fetal Brain Male	brain
3	chr7:26427000-26428400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:26427200-26427600	Active TSS	Brain Germinal Matrix	brain
5	chr7:26427200-26428200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:26427200-26428200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:26427200-26428400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:26427200-26428400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:26427200-26428400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:26427200-26428400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:26427200-26428400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:26427400-26427600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr7:26427400-26427800	Enhancers	Fetal Brain Female	brain
14	chr7:26427400-26428000	Enhancers	GM12878-XiMat	blood
15	chr7:26427400-26428200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:26427400-26428200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr7:26427400-26428200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links