Variant report

Variant	rs71532933
Chromosome Location	chr7:26441055-26441056
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26436164..26439155-chr7:26440434..26442954,2	MCF-7	breast:
2	chr7:26438613..26440865-chr7:26441029..26444147,3	MCF-7	breast:
3	chr7:26441047..26444822-chr7:26444886..26448664,4	K562	blood:

Variant related genes	Relation type
ENSG00000214870	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12700728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13225178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13225244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13226088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13240682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13241914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13242356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13243741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13245210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1731282	1.00[AFR][1000 genomes]
rs34611800	1.00[AFR][1000 genomes]
rs36062166	1.00[AFR][1000 genomes]
rs73072216	1.00[AFR][1000 genomes]
rs73072219	1.00[AFR][1000 genomes]
rs73072220	1.00[AFR][1000 genomes]
rs73072293	1.00[AFR][1000 genomes]
rs73072295	1.00[AFR][1000 genomes]
rs73074106	1.00[AFR][1000 genomes]
rs73074107	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26439000-26452200	Weak transcription	Ovary	ovary
2	chr7:26439000-26452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:26439000-26453000	Weak transcription	Lung	lung
4	chr7:26439200-26444000	Weak transcription	Liver	Liver
5	chr7:26439200-26444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:26439600-26443800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:26439600-26443800	Weak transcription	A549	lung
8	chr7:26439800-26443400	Weak transcription	Fetal Lung	lung
9	chr7:26439800-26443600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:26439800-26443800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:26439800-26453000	Weak transcription	Pancreas	Pancrea
12	chr7:26440000-26441400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:26440000-26443200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:26440000-26443200	Weak transcription	K562	blood
15	chr7:26440000-26444200	Weak transcription	Fetal Brain Female	brain
16	chr7:26440000-26444400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:26440000-26444600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:26440000-26445200	Weak transcription	Fetal Stomach	stomach
19	chr7:26440200-26441800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:26440800-26443400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:26440800-26446000	Weak transcription	Brain Germinal Matrix	brain
22	chr7:26440800-26460200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links