Variant report

Variant	rs34611800
Chromosome Location	chr7:26347449-26347450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26341541..26343807-chr7:26346274..26348081,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12700728	1.00[AFR][1000 genomes]
rs13225178	1.00[AFR][1000 genomes]
rs13225244	1.00[AFR][1000 genomes]
rs13226088	1.00[AFR][1000 genomes]
rs13240682	1.00[AFR][1000 genomes]
rs13241914	1.00[AFR][1000 genomes]
rs13242356	1.00[AFR][1000 genomes]
rs13243741	1.00[AFR][1000 genomes]
rs13245210	1.00[AFR][1000 genomes]
rs1731282	1.00[AFR][1000 genomes]
rs36062166	1.00[AFR][1000 genomes]
rs71532933	1.00[AFR][1000 genomes]
rs73072216	1.00[AFR][1000 genomes]
rs73072219	1.00[AFR][1000 genomes]
rs73072220	1.00[AFR][1000 genomes]
rs73072293	1.00[AFR][1000 genomes]
rs73072295	1.00[AFR][1000 genomes]
rs73074106	1.00[AFR][1000 genomes]
rs73074107	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26333600-26351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:26335000-26353000	Weak transcription	GM12878-XiMat	blood
3	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:26342600-26347600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:26342600-26348200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr7:26343200-26348200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr7:26343200-26348200	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr7:26343200-26353000	Weak transcription	Spleen	Spleen
9	chr7:26343200-26355800	Weak transcription	Fetal Intestine Small	intestine
10	chr7:26344600-26351600	Enhancers	Placenta	Placenta
11	chr7:26344800-26347800	Enhancers	Adipose Nuclei	Adipose
12	chr7:26345400-26347800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:26345600-26348000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:26345600-26386200	Weak transcription	Thymus	Thymus
15	chr7:26345800-26349400	Genic enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:26345800-26352400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:26345800-26375600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:26346000-26347800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:26346000-26348400	Genic enhancers	Primary B cells from cord blood	blood
20	chr7:26346000-26368200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr7:26346000-26373800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:26346200-26347800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:26346200-26349000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:26346200-26349200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:26346200-26349400	Enhancers	K562	blood
26	chr7:26346400-26347600	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr7:26346400-26348000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:26346400-26348400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:26346400-26348600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:26346600-26358200	Weak transcription	Liver	Liver
31	chr7:26346800-26348200	Enhancers	Pancreas	Pancrea
32	chr7:26346800-26360600	Weak transcription	Fetal Thymus	thymus
33	chr7:26347000-26347600	Enhancers	HMEC	breast
34	chr7:26347000-26348600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:26347000-26349000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:26347000-26356600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:26347200-26347600	Genic enhancers	HepG2	liver
38	chr7:26347200-26347800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:26347200-26347800	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr7:26347400-26347600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:26347400-26347600	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr7:26347400-26349800	Strong transcription	Primary T cells from cord blood	blood

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