Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:26443364..26446352-chr7:26455253..26457361,2	K562	blood:
2	chr7:26455420..26458332-chr7:26528292..26530965,2	MCF-7	breast:
3	chr7:26436792..26442283-chr7:26453142..26459992,7	K562	blood:

Variant related genes	Relation type
ENSG00000214870	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12700728	1.00[AFR][1000 genomes]
rs13225178	1.00[AFR][1000 genomes]
rs13225244	1.00[AFR][1000 genomes]
rs13226088	1.00[AFR][1000 genomes]
rs13240682	1.00[AFR][1000 genomes]
rs13241914	1.00[AFR][1000 genomes]
rs13242356	1.00[AFR][1000 genomes]
rs13243741	1.00[AFR][1000 genomes]
rs13245210	1.00[AFR][1000 genomes]
rs1731282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34611800	1.00[AFR][1000 genomes]
rs36062166	1.00[AFR][1000 genomes]
rs71532933	1.00[AFR][1000 genomes]
rs73072216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73072219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73072293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73072295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73072301	0.94[EUR][1000 genomes]
rs73074106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26440800-26460200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:26446000-26471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:26446800-26459800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:26452600-26458000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:26453400-26457800	Weak transcription	Fetal Lung	lung
6	chr7:26453400-26468400	Weak transcription	Pancreas	Pancrea
7	chr7:26453600-26462600	Weak transcription	Lung	lung
8	chr7:26453800-26456600	Weak transcription	K562	blood
9	chr7:26453800-26457000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:26455200-26456000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:26455200-26456000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:26455400-26455800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:26455400-26455800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:26455400-26456000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:26455400-26456000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:26455400-26456000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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