Variant report

Variant	rs73072216
Chromosome Location	chr7:26449973-26449974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26442296..26446078-chr7:26448777..26452832,3	K562	blood:
2	chr1:109097103..109098848-chr7:26449846..26452157,2	MCF-7	breast:
3	chr7:26448155..26450355-chr7:26451768..26453490,2	K562	blood:
4	chr7:26449196..26451207-chr7:26451616..26453577,2	MCF-7	breast:
5	chr7:26448654..26450705-chr7:26456619..26460704,3	K562	blood:
6	chr7:26444175..26445872-chr7:26449733..26452711,2	MCF-7	breast:
7	chr7:26435558..26440454-chr7:26449567..26452486,5	MCF-7	breast:
8	chr7:26442296..26445236-chr7:26449930..26452832,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12700728	1.00[AFR][1000 genomes]
rs13225178	1.00[AFR][1000 genomes]
rs13225244	1.00[AFR][1000 genomes]
rs13226088	1.00[AFR][1000 genomes]
rs13240682	1.00[AFR][1000 genomes]
rs13241914	1.00[AFR][1000 genomes]
rs13242356	1.00[AFR][1000 genomes]
rs13243741	1.00[AFR][1000 genomes]
rs13245210	1.00[AFR][1000 genomes]
rs1731282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34611800	1.00[AFR][1000 genomes]
rs36062166	1.00[AFR][1000 genomes]
rs71532933	1.00[AFR][1000 genomes]
rs73072219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73072220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73072293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73072295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73074106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73074107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26439000-26452200	Weak transcription	Ovary	ovary
2	chr7:26439000-26452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:26439000-26453000	Weak transcription	Lung	lung
4	chr7:26439800-26453000	Weak transcription	Pancreas	Pancrea
5	chr7:26440800-26460200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:26444200-26452800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:26444600-26453000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:26446000-26471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:26446800-26459800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:26449000-26450200	Enhancers	Fetal Kidney	kidney
11	chr7:26449000-26450600	Enhancers	Fetal Lung	lung
12	chr7:26449400-26450200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:26449400-26450200	Enhancers	Adipose Nuclei	Adipose
14	chr7:26449400-26450400	Enhancers	Fetal Stomach	stomach
15	chr7:26449600-26450200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:26449800-26450200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:26449800-26450200	Enhancers	Brain Germinal Matrix	brain
18	chr7:26449800-26453000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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