Variant report

Variant	rs12701699
Chromosome Location	chr7:39189412-39189413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10234092	0.82[AMR][1000 genomes]
rs10242528	0.95[CEU][hapmap];0.84[YRI][hapmap]
rs10252129	0.95[CEU][hapmap]
rs10951595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10951596	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951597	0.95[CEU][hapmap]
rs11767080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11773046	0.95[CEU][hapmap];0.87[YRI][hapmap]
rs11972468	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12701695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12701698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1525793	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1525800	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17511572	0.91[CEU][hapmap];0.83[AMR][1000 genomes]
rs2049496	0.96[CEU][hapmap];0.82[AMR][1000 genomes]
rs2091323	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2280668	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2392619	0.94[ASN][1000 genomes]
rs28459466	0.92[YRI][hapmap]
rs4720311	0.96[CEU][hapmap];0.83[YRI][hapmap]
rs4723823	0.83[CEU][hapmap];0.80[CHB][hapmap];0.85[YRI][hapmap]
rs4723827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6462894	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6462895	0.92[YRI][hapmap]
rs6956307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6979829	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7788521	0.95[CEU][hapmap]
rs955591	0.96[CEU][hapmap];0.88[YRI][hapmap]
rs9639811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links