Variant report

Variant	rs1525793
Chromosome Location	chr7:39187071-39187072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39181307..39183603-chr7:39185314..39187095,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10229456	0.91[CEU][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10234092	0.84[CHD][hapmap]
rs10244776	1.00[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10252129	0.84[CHD][hapmap]
rs10951595	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10951596	0.99[ASN][1000 genomes]
rs10951597	0.84[CHD][hapmap]
rs11767080	0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11773046	0.84[CHD][hapmap]
rs11972468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531437	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs12531464	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs12534084	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs12536501	0.91[CEU][hapmap]
rs12701695	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12701698	0.93[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap]
rs12701699	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1525800	0.82[ASW][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap]
rs17511572	0.84[CHD][hapmap]
rs2091323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2280668	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes]
rs2392619	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28459466	1.00[CEU][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs3924710	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs4279508	0.95[CEU][hapmap]
rs4401749	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs4472423	0.90[CEU][hapmap]
rs4473925	0.95[CEU][hapmap]
rs4720315	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs4723827	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs6462894	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6462895	1.00[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs6955619	0.94[CEU][hapmap]
rs6956307	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6979829	0.94[ASN][1000 genomes]
rs7784092	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs7787466	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs7802746	0.91[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap]
rs9639811	0.93[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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