Variant report

Variant	rs12705321
Chromosome Location	chr7:105335288-105335289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105333638..105336603-chr7:105339254..105341591,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11971669	1.00[CEU][hapmap]
rs11974376	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs13223425	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13223649	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13227308	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13228177	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2075114	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34803070	0.83[EUR][1000 genomes]
rs35261043	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3887375	1.00[CEU][hapmap]
rs567003	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105328400-105335800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:105330400-105352200	Weak transcription	Gastric	stomach
3	chr7:105331200-105336000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:105331600-105340600	Weak transcription	Spleen	Spleen
5	chr7:105331800-105338600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:105332200-105353200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:105332400-105336000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:105332400-105336200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:105332400-105336200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:105332400-105336600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:105332400-105337800	Weak transcription	Lung	lung
12	chr7:105332600-105335800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:105332600-105335800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:105332600-105335800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:105332600-105336000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:105332600-105336000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:105332600-105339200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:105332600-105347600	Weak transcription	Ovary	ovary
19	chr7:105332600-105348000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:105332600-105348400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:105332600-105352200	Weak transcription	Aorta	Aorta
22	chr7:105332800-105335800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:105332800-105336600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:105332800-105336800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:105332800-105337400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:105332800-105338000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:105332800-105343800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:105332800-105343800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:105332800-105344000	Weak transcription	Brain Anterior Caudate	brain
30	chr7:105332800-105344000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:105332800-105344000	Weak transcription	NHDF-Ad	bronchial
32	chr7:105332800-105347000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:105332800-105347000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:105332800-105347000	Weak transcription	Fetal Lung	lung
35	chr7:105332800-105347600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:105332800-105347800	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:105332800-105347800	Weak transcription	Pancreas	Pancrea
38	chr7:105332800-105347800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:105332800-105348200	Weak transcription	Fetal Heart	heart
40	chr7:105332800-105348200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:105332800-105348400	Weak transcription	Adipose Nuclei	Adipose
42	chr7:105332800-105348400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:105332800-105349800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:105332800-105350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr7:105332800-105351400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:105332800-105351600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:105332800-105352000	Weak transcription	Colonic Mucosa	Colon
48	chr7:105333000-105350400	Weak transcription	Fetal Brain Female	brain
49	chr7:105333400-105335800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:105333400-105335800	Weak transcription	Fetal Muscle Leg	muscle

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