Variant report

Variant	rs13223649
Chromosome Location	chr7:105328192-105328193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105320146..105323057-chr7:105327793..105330127,2	MCF-7	breast:
2	chr7:105319464..105322936-chr7:105325535..105328908,4	K562	blood:

Variant related genes	Relation type
ENSG00000146776	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11971669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11974376	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11975353	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705321	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13223425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075114	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs35832644	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887375	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71562671	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71562672	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105317800-105331400	Weak transcription	Fetal Intestine Large	intestine
2	chr7:105319000-105329400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:105319800-105328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:105319800-105331600	Weak transcription	Aorta	Aorta
5	chr7:105320000-105328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:105320000-105330800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:105320000-105330800	Weak transcription	Left Ventricle	heart
8	chr7:105320000-105330800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:105320000-105331000	Weak transcription	Primary B cells from cord blood	blood
10	chr7:105320000-105331000	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:105320000-105331000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:105320000-105331000	Weak transcription	HUVEC	blood vessel
13	chr7:105320000-105331200	Weak transcription	Thymus	Thymus
14	chr7:105320000-105331400	Weak transcription	Right Atrium	heart
15	chr7:105320000-105331600	Weak transcription	Esophagus	oesophagus
16	chr7:105320200-105329400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:105320800-105329800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:105321200-105329200	Weak transcription	Stomach Mucosa	stomach
19	chr7:105321200-105329400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:105321200-105329400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:105321400-105329400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:105321400-105331200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:105321400-105331200	Weak transcription	Psoas Muscle	Psoas
24	chr7:105321400-105331400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:105321600-105329400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:105321600-105330200	Weak transcription	Brain Substantia Nigra	brain
27	chr7:105321600-105331000	Weak transcription	Brain Anterior Caudate	brain
28	chr7:105321600-105331400	Weak transcription	Lung	lung
29	chr7:105323600-105331200	Weak transcription	NHLF	lung
30	chr7:105323800-105328200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:105323800-105328200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:105323800-105331000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr7:105324000-105329400	Weak transcription	Brain Germinal Matrix	brain
34	chr7:105324000-105331200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:105324400-105328200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:105324400-105328600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:105324400-105328600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr7:105324400-105331200	Weak transcription	Liver	Liver
39	chr7:105324600-105328200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr7:105324600-105328200	Weak transcription	Spleen	Spleen
41	chr7:105324600-105328600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr7:105325400-105328600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:105326200-105328200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:105326200-105328400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:105326200-105328600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr7:105326200-105328600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr7:105326200-105329200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:105326400-105328200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:105326400-105329800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr7:105326400-105331400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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