Variant report

Variant	rs3887375
Chromosome Location	chr7:105324634-105324635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10272675	1.00[CHB][hapmap]
rs11772509	1.00[YRI][hapmap]
rs11971669	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11974376	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs11975353	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12705321	1.00[CEU][hapmap]
rs13223425	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13223649	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13227308	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17152164	1.00[CHB][hapmap]
rs2075114	1.00[CEU][hapmap]
rs35832644	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71562671	0.88[AMR][1000 genomes]
rs71562672	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105306200-105325200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:105317800-105331400	Weak transcription	Fetal Intestine Large	intestine
3	chr7:105318000-105327000	Weak transcription	Fetal Brain Female	brain
4	chr7:105319000-105329400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:105319800-105325600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:105319800-105327800	Weak transcription	Fetal Intestine Small	intestine
7	chr7:105319800-105328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:105319800-105331600	Weak transcription	Aorta	Aorta
9	chr7:105320000-105325600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:105320000-105328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:105320000-105330800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:105320000-105330800	Weak transcription	Left Ventricle	heart
13	chr7:105320000-105330800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:105320000-105331000	Weak transcription	Primary B cells from cord blood	blood
15	chr7:105320000-105331000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:105320000-105331000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:105320000-105331000	Weak transcription	HUVEC	blood vessel
18	chr7:105320000-105331200	Weak transcription	Thymus	Thymus
19	chr7:105320000-105331400	Weak transcription	Right Atrium	heart
20	chr7:105320000-105331600	Weak transcription	Esophagus	oesophagus
21	chr7:105320200-105329400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:105320800-105329800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:105321200-105329200	Weak transcription	Stomach Mucosa	stomach
24	chr7:105321200-105329400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr7:105321200-105329400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:105321400-105325000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr7:105321400-105327800	Weak transcription	Fetal Stomach	stomach
28	chr7:105321400-105328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:105321400-105329400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:105321400-105331200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:105321400-105331200	Weak transcription	Psoas Muscle	Psoas
32	chr7:105321400-105331400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr7:105321600-105326000	Weak transcription	Ovary	ovary
34	chr7:105321600-105329400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:105321600-105330200	Weak transcription	Brain Substantia Nigra	brain
36	chr7:105321600-105331000	Weak transcription	Brain Anterior Caudate	brain
37	chr7:105321600-105331400	Weak transcription	Lung	lung
38	chr7:105322000-105327400	Weak transcription	Placenta	Placenta
39	chr7:105323200-105326200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:105323600-105331200	Weak transcription	NHLF	lung
41	chr7:105323800-105325600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:105323800-105325600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr7:105323800-105325800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:105323800-105328200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:105323800-105328200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr7:105323800-105331000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr7:105324000-105325200	Weak transcription	Fetal Lung	lung
48	chr7:105324000-105325600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:105324000-105326000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:105324000-105326400	Strong transcription	Primary T cells from cord blood	blood

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