Variant report

Variant	rs35832644
Chromosome Location	chr7:105330658-105330659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105310890..105312874-chr7:105328926..105331441,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11971669	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11974376	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11975353	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223425	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223649	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227308	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887375	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71562671	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71562672	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105317800-105331400	Weak transcription	Fetal Intestine Large	intestine
2	chr7:105319800-105331600	Weak transcription	Aorta	Aorta
3	chr7:105320000-105330800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:105320000-105330800	Weak transcription	Left Ventricle	heart
5	chr7:105320000-105330800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:105320000-105331000	Weak transcription	Primary B cells from cord blood	blood
7	chr7:105320000-105331000	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:105320000-105331000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:105320000-105331000	Weak transcription	HUVEC	blood vessel
10	chr7:105320000-105331200	Weak transcription	Thymus	Thymus
11	chr7:105320000-105331400	Weak transcription	Right Atrium	heart
12	chr7:105320000-105331600	Weak transcription	Esophagus	oesophagus
13	chr7:105321400-105331200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:105321400-105331200	Weak transcription	Psoas Muscle	Psoas
15	chr7:105321400-105331400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:105321600-105331000	Weak transcription	Brain Anterior Caudate	brain
17	chr7:105321600-105331400	Weak transcription	Lung	lung
18	chr7:105323600-105331200	Weak transcription	NHLF	lung
19	chr7:105323800-105331000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr7:105324000-105331200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:105324400-105331200	Weak transcription	Liver	Liver
22	chr7:105326400-105331400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:105326600-105330800	Weak transcription	Ovary	ovary
24	chr7:105327400-105331400	Enhancers	Placenta	Placenta
25	chr7:105328000-105333000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:105328200-105330800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr7:105328200-105330800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr7:105328200-105332400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:105328200-105332400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:105328400-105330800	Weak transcription	Primary T cells from cord blood	blood
31	chr7:105328400-105331200	Weak transcription	Fetal Intestine Small	intestine
32	chr7:105328400-105331400	Enhancers	Fetal Stomach	stomach
33	chr7:105328400-105335800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:105328600-105330800	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:105328600-105331000	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr7:105328600-105331000	Weak transcription	Spleen	Spleen
37	chr7:105328600-105331000	Weak transcription	HSMMtube	muscle
38	chr7:105328600-105331200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:105328600-105331400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:105328600-105331600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:105328800-105331000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr7:105328800-105331400	Weak transcription	HSMM	muscle
43	chr7:105329000-105331200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr7:105329400-105330800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr7:105329400-105331000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:105329400-105331000	Enhancers	Fetal Brain Male	brain
47	chr7:105329400-105331200	Enhancers	Primary B cells from peripheral blood	blood
48	chr7:105329400-105331200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr7:105329400-105331200	Enhancers	Stomach Smooth Muscle	stomach
50	chr7:105329400-105331400	Enhancers	Cortex derived primary cultured neurospheres	brain

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