Variant report

Variant	rs71562671
Chromosome Location	chr7:105320063-105320064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr7:105317655-105320231	PBDE	blood:	n/a	chr7:105318785-105318796 chr7:105318251-105318260 chr7:105318248-105318264 chr7:105318947-105318957

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105314687..105317812-chr7:105319787..105322529,3	K562	blood:

Variant related genes	Relation type
ATXN7L1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11971669	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11974376	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975353	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13223425	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13223649	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13227308	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35832644	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3887375	0.88[AMR][1000 genomes]
rs71562672	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105290400-105321800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:105306200-105325200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:105314200-105320600	Weak transcription	HepG2	liver
4	chr7:105315200-105320600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:105315200-105324200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:105315800-105323200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:105316400-105320600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:105316800-105321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:105317400-105320200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr7:105317600-105320200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:105317800-105320200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:105317800-105321000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:105317800-105322800	Weak transcription	Brain Germinal Matrix	brain
14	chr7:105317800-105331400	Weak transcription	Fetal Intestine Large	intestine
15	chr7:105318000-105327000	Weak transcription	Fetal Brain Female	brain
16	chr7:105318200-105321400	Enhancers	Fetal Muscle Leg	muscle
17	chr7:105318600-105320800	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr7:105318800-105320200	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr7:105318800-105320200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr7:105319000-105329400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:105319200-105320200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:105319200-105320800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr7:105319200-105321600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:105319200-105322400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr7:105319400-105320200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:105319400-105320400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr7:105319400-105320800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr7:105319600-105320200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr7:105319600-105320400	Enhancers	Spleen	Spleen
30	chr7:105319600-105320600	Enhancers	Stomach Mucosa	stomach
31	chr7:105319600-105321000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:105319600-105321000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:105319600-105322000	Enhancers	Placenta	Placenta
34	chr7:105319800-105320200	Enhancers	Primary B cells from peripheral blood	blood
35	chr7:105319800-105320200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:105319800-105320200	Enhancers	Brain Cingulate Gyrus	brain
37	chr7:105319800-105320200	Enhancers	Brain Substantia Nigra	brain
38	chr7:105319800-105320600	Enhancers	Primary T cells fromperipheralblood	blood
39	chr7:105319800-105320600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr7:105319800-105320600	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr7:105319800-105320600	Weak transcription	Brain Angular Gyrus	brain
42	chr7:105319800-105320600	Weak transcription	Ovary	ovary
43	chr7:105319800-105321000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:105319800-105321200	Enhancers	Fetal Thymus	thymus
45	chr7:105319800-105321400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr7:105319800-105321400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr7:105319800-105321400	Enhancers	Fetal Stomach	stomach
48	chr7:105319800-105321800	Enhancers	Adipose Nuclei	Adipose
49	chr7:105319800-105325600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:105319800-105327800	Weak transcription	Fetal Intestine Small	intestine

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