Variant report

Variant	rs11974376
Chromosome Location	chr7:105321923-105321924
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105320146..105323057-chr7:105327793..105330127,2	MCF-7	breast:
2	chr7:105314687..105317812-chr7:105319787..105322529,3	K562	blood:
3	chr7:105295635..105297294-chr7:105321836..105324476,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11971669	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11975353	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12705321	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs13223425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13223649	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13227308	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2075114	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs35832644	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3887375	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs71562671	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562672	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105306200-105325200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:105315200-105324200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:105315800-105323200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:105317800-105322800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:105317800-105331400	Weak transcription	Fetal Intestine Large	intestine
6	chr7:105318000-105327000	Weak transcription	Fetal Brain Female	brain
7	chr7:105319000-105329400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:105319200-105322400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:105319600-105322000	Enhancers	Placenta	Placenta
10	chr7:105319800-105325600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:105319800-105327800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:105319800-105328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:105319800-105331600	Weak transcription	Aorta	Aorta
14	chr7:105320000-105322800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:105320000-105323200	Weak transcription	NHLF	lung
16	chr7:105320000-105323400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:105320000-105323600	Weak transcription	Fetal Brain Male	brain
18	chr7:105320000-105323800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:105320000-105324000	Weak transcription	Primary T cells from cord blood	blood
20	chr7:105320000-105324400	Enhancers	Liver	Liver
21	chr7:105320000-105325600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:105320000-105328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:105320000-105330800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:105320000-105330800	Weak transcription	Left Ventricle	heart
25	chr7:105320000-105330800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr7:105320000-105331000	Weak transcription	Primary B cells from cord blood	blood
27	chr7:105320000-105331000	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:105320000-105331000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:105320000-105331000	Weak transcription	HUVEC	blood vessel
30	chr7:105320000-105331200	Weak transcription	Thymus	Thymus
31	chr7:105320000-105331400	Weak transcription	Right Atrium	heart
32	chr7:105320000-105331600	Weak transcription	Esophagus	oesophagus
33	chr7:105320200-105322800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:105320200-105323000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr7:105320200-105323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:105320200-105329400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr7:105320400-105323000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr7:105320600-105322000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:105320600-105322000	Enhancers	HepG2	liver
40	chr7:105320600-105322400	Enhancers	H9 Cell Line	embryonic stem cell
41	chr7:105320600-105323400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr7:105320800-105329800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr7:105321000-105323600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:105321200-105322200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr7:105321200-105323200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr7:105321200-105323400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:105321200-105324000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr7:105321200-105329200	Weak transcription	Stomach Mucosa	stomach
49	chr7:105321200-105329400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:105321200-105329400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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