Variant report

Variant	rs12728033
Chromosome Location	chr1:217149609-217149610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217147953..217150849-chr1:217152542..217155478,3	MCF-7	breast:
2	chr1:217145233..217147235-chr1:217149077..217150789,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10492958	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10492960	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11572443	0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs11572453	0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs11572454	0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs11572489	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11576344	0.87[JPT][hapmap]
rs11587690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12741622	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12743080	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12755398	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1339213	0.91[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs1416538	0.86[EUR][1000 genomes]
rs1556891	0.87[JPT][hapmap]
rs17041530	0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs17041540	0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs17044587	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17044788	0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs17044806	0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs17044824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2818796	0.81[JPT][hapmap]
rs34250841	0.85[EUR][1000 genomes]
rs34710011	0.82[EUR][1000 genomes]
rs35271799	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4846797	0.81[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4846798	0.92[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4846799	0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6690530	0.86[EUR][1000 genomes]
rs71643432	0.86[EUR][1000 genomes]
rs71643434	0.84[EUR][1000 genomes]
rs71643435	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867408	0.84[EUR][1000 genomes]
rs867409	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867410	0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs920170	0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468149	chr1:217134966-217203091	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv549204	chr1:217134966-217203091	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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