Variant report

Variant	rs12728693
Chromosome Location	chr1:210663411-210663412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10863839	0.86[ASN][1000 genomes]
rs11582700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12049235	0.85[ASN][1000 genomes]
rs12408469	0.97[ASN][1000 genomes]
rs12411254	0.94[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs12733171	0.93[ASN][1000 genomes]
rs12759944	0.88[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs17188260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17260445	1.00[YRI][hapmap]
rs2473623	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4348724	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs4500315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4622068	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs4844530	0.87[ASN][1000 genomes]
rs4845035	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs4845038	0.92[ASN][1000 genomes]
rs6691136	1.00[YRI][hapmap]
rs7544655	0.88[CHB][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210653800-210678800	Weak transcription	HSMM	muscle
4	chr1:210657000-210663600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:210657000-210669600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:210658800-210664800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:210659000-210663600	Strong transcription	HSMMtube	muscle
8	chr1:210660600-210664600	Weak transcription	Aorta	Aorta
9	chr1:210662200-210663600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:210662600-210664800	Enhancers	Fetal Muscle Leg	muscle
11	chr1:210663000-210663600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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