Variant report

Variant	rs7544655
Chromosome Location	chr1:210675102-210675103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210544665..210547038-chr1:210673279..210675772,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10735507	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10746426	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10863839	0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10863840	0.93[EUR][1000 genomes]
rs11119521	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs11119522	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs11119523	0.94[EUR][1000 genomes]
rs11582700	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs12049235	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12408469	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12411254	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12728693	0.88[CHB][hapmap]
rs12733171	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12759944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17188260	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2473623	0.83[CHB][hapmap]
rs4348724	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4500315	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs4545340	0.95[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4622068	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4844530	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4845035	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4845038	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210653800-210678800	Weak transcription	HSMM	muscle
2	chr1:210670200-210678800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:210672400-210675200	Enhancers	HSMMtube	muscle
4	chr1:210673200-210678800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:210673600-210675200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:210673600-210679200	Weak transcription	Right Ventricle	heart
7	chr1:210674000-210678400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:210674400-210679000	Weak transcription	Aorta	Aorta
9	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:210674600-210678800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:210675000-210677800	Weak transcription	Fetal Heart	heart

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