Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10735507	0.89[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.99[ASN][1000 genomes]
rs10746426	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10863839	0.93[ASW][hapmap];0.80[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10863840	0.95[EUR][1000 genomes]
rs11119521	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11119522	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs11119523	0.96[EUR][1000 genomes]
rs12049235	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12408469	0.83[EUR][1000 genomes]
rs12411254	0.81[CHD][hapmap]
rs12733171	0.98[EUR][1000 genomes]
rs12748886	0.84[CHB][hapmap]
rs12759944	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs17016349	0.84[CHB][hapmap]
rs17188260	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs4348724	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs4622068	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs4844530	0.96[EUR][1000 genomes]
rs4845035	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs4845038	0.98[EUR][1000 genomes]
rs6540601	0.99[ASN][1000 genomes]
rs7544655	0.95[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4545340	IRF6	cis	parietal	SCAN
rs4545340	KCNH1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210679800-210689400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210680600-210731000	Weak transcription	HSMM	muscle
4	chr1:210683200-210687400	Weak transcription	HSMMtube	muscle
5	chr1:210685600-210689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:210685800-210689800	Weak transcription	Pancreas	Pancrea

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